<?xml version="1.0" encoding="UTF-8" standalone="yes"?><oembed><version><![CDATA[1.0]]></version><provider_name><![CDATA[amphoteros]]></provider_name><provider_url><![CDATA[http://amphoteros.com]]></provider_url><author_name><![CDATA[ayudin2013]]></author_name><author_url><![CDATA[https://amphoteros.com/author/ayudin2013/]]></author_url><title><![CDATA[Boron in aromatic&nbsp;molecules]]></title><type><![CDATA[link]]></type><html><![CDATA[<p>Here’s my Monday, October 7, 2013’s two cool facts about boron heterocycles.</p>
<p>First of all, boron is tricky and it is not always obvious which factors control stability. Take, for instance, a recent theoretical JACS paper by Professor Roald Hoffmann of Cornell University. The manuscript contains a lot of very interesting data on boron heterocycles and is, in many ways, a call to arms for those who are interested in this subject. However, how would you predict the whopping 24 kcal/mol difference in stability (calculated relative energies) between the following two molecules? I realize they are not the same, but 24 kcal/mol? This means that NBN motifs are special…</p>
<p><a href="https://amphoteros.files.wordpress.com/2013/10/hoff1.jpg"><img class="size-full wp-image aligncenter" id="i-796" alt="Image" src="https://amphoteros.files.wordpress.com/2013/10/hoff1.jpg?w=487" srcset="https://amphoteros.files.wordpress.com/2013/10/hoff1.jpg?w=487 487w, https://amphoteros.files.wordpress.com/2013/10/hoff1.jpg?w=150 150w, https://amphoteros.files.wordpress.com/2013/10/hoff1.jpg?w=300 300w, https://amphoteros.files.wordpress.com/2013/10/hoff1.jpg?w=768 768w, https://amphoteros.files.wordpress.com/2013/10/hoff1.jpg 815w" sizes="(max-width: 487px) 100vw, 487px" /></a></p>
<p>A lot of really imaginative work in the area of aromatic boron heterocycles has been done by Prof. Liu of Boston College (formerly of the University of Oregon). I am not going to say anything about his nice synthesis of aromatic boron-containing heterocycles. Instead, I will focus on properties and showcase a co-crystal structure between azaborine and T4 lysozyme. The hydrophobic cavity of this enzyme accepted azaborine, a view of which I made using PyMol (pdb code 3hh3, below). It can be clearly seen that the azaborine molecule binds in two conformations which relate to each other by way of a “flip”. Given the amount of aryl groups in biologically active molecules, these boron heterocycles are certainly interesting! How about using them as fragments? Someone should&#8230;<a href="https://amphoteros.files.wordpress.com/2013/10/china.jpg"><img data-attachment-id="805" data-permalink="https://amphoteros.com/2013/10/08/boron-in-aromatic-molecules/china/" data-orig-file="https://amphoteros.files.wordpress.com/2013/10/china.jpg?w=584&#038;h=241" data-orig-size="695,287" data-comments-opened="1" data-image-meta="{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}" data-image-title="china" data-image-description="" data-medium-file="https://amphoteros.files.wordpress.com/2013/10/china.jpg?w=584&#038;h=241?w=300" data-large-file="https://amphoteros.files.wordpress.com/2013/10/china.jpg?w=584&#038;h=241?w=695" class="alignnone size-full wp-image-805" alt="china" src="https://amphoteros.files.wordpress.com/2013/10/china.jpg?w=584&#038;h=241" width="584" height="241" srcset="https://amphoteros.files.wordpress.com/2013/10/china.jpg?w=584&amp;h=241 584w, https://amphoteros.files.wordpress.com/2013/10/china.jpg?w=150&amp;h=62 150w, https://amphoteros.files.wordpress.com/2013/10/china.jpg?w=300&amp;h=124 300w, https://amphoteros.files.wordpress.com/2013/10/china.jpg 695w" sizes="(max-width: 584px) 100vw, 584px" /></a></p>
<p><a href="https://amphoteros.files.wordpress.com/2013/10/bbb.jpg"><img class="size-full wp-image aligncenter" id="i-798" alt="Image" src="https://amphoteros.files.wordpress.com/2013/10/bbb.jpg?w=487" srcset="https://amphoteros.files.wordpress.com/2013/10/bbb.jpg?w=487 487w, https://amphoteros.files.wordpress.com/2013/10/bbb.jpg?w=138 138w, https://amphoteros.files.wordpress.com/2013/10/bbb.jpg?w=276 276w, https://amphoteros.files.wordpress.com/2013/10/bbb.jpg?w=768 768w, https://amphoteros.files.wordpress.com/2013/10/bbb.jpg 900w" sizes="(max-width: 487px) 100vw, 487px" /></a></p>
<p style="text-align:center;"><a href="http://onlinelibrary.wiley.com/doi/10.1002/ange.200903390/abstract">http://onlinelibrary.wiley.com/doi/10.1002/ange.200903390/abstract</a></p>
]]></html><thumbnail_url><![CDATA[https://i1.wp.com/amphoteros.files.wordpress.com/2013/10/hoff1.jpg?fit=440%2C330]]></thumbnail_url><thumbnail_width><![CDATA[440]]></thumbnail_width><thumbnail_height><![CDATA[174]]></thumbnail_height></oembed>