<?xml version="1.0" encoding="UTF-8" standalone="yes"?><oembed><version><![CDATA[1.0]]></version><provider_name><![CDATA[PSSD LAB]]></provider_name><provider_url><![CDATA[https://pssdlab.wordpress.com]]></provider_url><author_name><![CDATA[ghostpssd]]></author_name><author_url><![CDATA[https://pssdlab.wordpress.com/author/ghostpssd/]]></author_url><title><![CDATA[GeneFreq]]></title><type><![CDATA[link]]></type><html><![CDATA[<p style="text-align:center;"><strong>About GeneFreq</strong></p>
<p>GeneFreq was developed in the summer of 2018 to analyze differences in gene frequencies between control and experimental genome groups. It runs using the coding language Python.</p>
<p style="text-align:center;"><strong>Setup (In Progress)</strong></p>
<ol>
<li>Download <a href="https://www.python.org/">Python</a></li>
<li>Download GeneFreq.py (below)3</li>
<li>Name 23andMe .txt files accordingly:
<ol>
<li><em>This can be modified, but as the program is currently written, name all control files: <span style="color:#ff6600;">0.txt, 1.txt, 2.txt</span>, etc&#8230; and all PSSD files: <span style="color:#ff6600;">PSSD_0.txt, PSSD_1.txt, PSSD_2.txt</span>, etc&#8230;</em></li>
</ol>
</li>
<li>Run program and enter information on number of genomes being analyzed, and proportion difference needed to flag a gene.</li>
<li>Open output file to see genes of interest.</li>
</ol>
<p>&nbsp;</p>
<p><img data-attachment-id="1085" data-permalink="https://pssdlab.wordpress.com/pssd-genome-project/genefreq/" data-orig-file="https://pssdlab.files.wordpress.com/2018/07/genefreq.png?w=236&#038;h=130" data-orig-size="2927,1609" data-comments-opened="1" data-image-meta="{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;,&quot;orientation&quot;:&quot;0&quot;}" data-image-title="GeneFreq" data-image-description="" data-medium-file="https://pssdlab.files.wordpress.com/2018/07/genefreq.png?w=236&#038;h=130?w=300" data-large-file="https://pssdlab.files.wordpress.com/2018/07/genefreq.png?w=236&#038;h=130?w=1024" class="  wp-image-1085 aligncenter" src="https://pssdlab.files.wordpress.com/2018/07/genefreq.png?w=236&#038;h=130" alt="GeneFreq" width="236" height="130" srcset="https://pssdlab.files.wordpress.com/2018/07/genefreq.png?w=236&amp;h=130 236w, https://pssdlab.files.wordpress.com/2018/07/genefreq.png?w=472&amp;h=260 472w, https://pssdlab.files.wordpress.com/2018/07/genefreq.png?w=150&amp;h=82 150w, https://pssdlab.files.wordpress.com/2018/07/genefreq.png?w=300&amp;h=165 300w" sizes="(max-width: 236px) 100vw, 236px" /></p>
<table style="width:100%;">
<tbody>
<tr>
<th>Operating System</th>
<th>Version</th>
<th></th>
</tr>
<tr>
<td>Mac/PC</td>
<td>1.0</td>
<td><a href="https://drive.google.com/file/d/1snZlynQHdCesXwAqdzF40B5pWHu0Y1aR/view">Download</a></td>
</tr>
<tr>
<td>Linux</td>
<td>Coming Soon</td>
<td>N/A</td>
</tr>
</tbody>
</table>
<p><!--more--></p>
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